Stem-loop mes-MIR159c

Accession

MI0024219

Description

Manihot esculenta mes-MIR159c precursor miRNA

Literature search

6 open access papers mention mes-MIR159c
(19 sentences)

Sequence

ggguuuuuggugagguuuaauggagcucucuucccuccuacuguaaaggaggcgaagguagguaggccauggcugccaguucaugaauaccccugggugugcaggauaagcagagagagugcgcaggcuaaggguuugcaugaccugggagacgugguuaucuuggccauuuuuauAUUGGAGUGAAGGGAGCUCUGuugucuuucuaacaaucu
(((((.((((.((((..((((((((((((((((.((((...((((((((.(((.((((((.....((((((.((.((((.(((((...((((.(((.((((((................))))))..))).))))...))))).)))).)).)))))))))))).))).))))))))..)))).)))))))))))))))))))).)))).)))))

Structure

     u    u    uu                c    uac        a   g      gguag      g  g    u     aau    c   -g      ggauaag 
ggguu uugg gagg  uaauggagcucucuuc cucc   uguaaagg ggc aaggua     gccaug cu ccag ucaug   accc ugg  ugugca       c
||||| |||| ||||  |||||||||||||||| ||||   |||||||| ||| ||||||     |||||| || |||| |||||   |||| |||  ||||||        
ucuaa aauc uucu  guuGUCUCGAGGGAAG GAGG   Auauuuuu ccg uucuau     uggugc ga gguc aguac   uggg auc  acgcgu       a
     c    u    --                U    -UU        a   g      -----      a  g    c     guu    a   gg      gagagag 

Annotation confidence Not enough data

Genome context

scaffold03581: 941900-942114 [-]

Mature mes-miR159c

• Accession: MIMAT0029177
• Description: Manihot esculenta mes-miR159c mature miRNA
• Sequence: 177 - AUUGGAGUGAAGGGAGCUCUG - 197
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269