Stem-loop mes-MIR159d

Accession

MI0024220

Description

Manihot esculenta mes-MIR159d precursor miRNA

Literature search

6 open access papers mention mes-MIR159d
(19 sentences)

Sequence

uaauggagaucucuucacuccuauguaaaggaggcaaugguaggccauggcugcuaguucaugaauaccccugggugcgcacugugcaggauaagcagauaucgauugaucaugauuauuaugggauuggcuugggugcgcaggcuaaggguuugcaugaccugggagacgugguugccuuggcauuuuuuauAUUGGAGUGAAGGGAGCUCUGuug
((((((((.((((((((((((.(((((((((((.(((.(((((.(((((.((.((((.(((((...((((.(((.((((((((........(((((......(((((..((((((...))))))))))))))))))))))))..))).))))...))))).)))).)).))))))))))))).).)))))))))).)))))))))))).))))))))

Structure

        a            u          - g   u     g     g  g    u     aau    c   -g        gugcagga     agauau     ga      u 
uaauggag ucucuucacucc auguaaagga g caa gguag ccaug cu cuag ucaug   accc ugg  ugcgcacu        uaagc      cgauu  ucauga  
|||||||| |||||||||||| |||||||||| | ||| ||||| ||||| || |||| |||||   |||| |||  ||||||||        |||||      |||||  |||||| u
guuGUCUC AGGGAAGUGAGG UAuauuuuuu c guu ccguu ggugc ga gguc aguac   uggg auc  acgcgugg        guucg      guuag  gguauu  
        G            U          a g   -     -     a  g    c     guu    a   gg        --------     ------     --      a 

Annotation confidence Not enough data

Genome context

scaffold02658: 496637-496853 [-]

Mature mes-miR159d

• Accession: MIMAT0029178
• Description: Manihot esculenta mes-miR159d mature miRNA
• Sequence: 194 - AUUGGAGUGAAGGGAGCUCUG - 214
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269