Stem-loop mes-MIR172e

Accession

MI0024293

Description

Manihot esculenta mes-MIR172e precursor miRNA

Literature search

4 open access papers mention mes-MIR172e
(8 sentences)

Sequence

agucacuguuugccgauggagcaucaucaagauucacaaacuuuaucuggggcucguggggguggagaacuuggugauaguggcuuuugguguggucccuuuugcuucaauccaaauagcccuuugauaugGGAAUCUUGAUGAUGCUGCAGcggcaauaaguggcu
(((((((..((((((.((.((((((((((((((((.((.....((((.((((((.((..((((((((.....((.(((....(((...)))...))))).....)))).))))..))))))))..)))))).)))))))))))))))).)).))))))..)))))))

Structure

       gu      a  g                a  aacuu    -u      c  gg    -    aacuu  u   agug   u 
agucacu  uugccg ug agcaucaucaagauuc ca     uauc  ggggcu gu  gggu ggag     gg gau    gcu  
|||||||  |||||| || |||||||||||||||| ||     ||||  |||||| ||  |||| ||||     || |||    ||| u
ucgguga  aacggc AC UCGUAGUAGUUCUAAG gu     auag  ucccga ua  ccua cuuc     cc cug    ugg  
       au      G  G                G  -----    uu      -  aa    a    guuuu  -   -gug   u 

Annotation confidence Not enough data

Genome context

scaffold06705: 57288-57454 [+]

Mature mes-miR172e

• Accession: MIMAT0029251
• Description: Manihot esculenta mes-miR172e mature miRNA
• Sequence: 132 - GGAAUCUUGAUGAUGCUGCAG - 152
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269