Stem-loop mes-MIR172f

Accession

MI0024294

Description

Manihot esculenta mes-MIR172f precursor miRNA

Literature search

4 open access papers mention mes-MIR172f
(8 sentences)

Sequence

uugcugauggagcaucaucaagauucacacacuuuauccagggcuaguggaguagaaguuuaugguggcuuuucuuggucgcuuuugcuucaauccaaacggcccuuugauaugGGAAUCUUGAUGAUGCUGCAGcggcaa
.(((((.((.((((((((((((((((.(.((...((((.((((((..((((...(((((....(((((((......)))))))...)))))..))))...))))))..))))))))))))))))))))))).)).))))).

Structure

u     a  g                a a  cuu    -c      -ag    gua     uuau       uu 
 ugcug ug agcaucaucaagauuc c ca   uauc  agggcu   ugga   gaagu    gguggcu  u
 ||||| || |||||||||||||||| | ||   ||||  ||||||   ||||   |||||    |||||||   
 acggc AC UCGUAGUAGUUCUAAG G gu   auag  ucccgg   accu   cuucg    ucgcugg  c
a     G  G                - -  ---    uu      caa    -aa     -uuu       uu 

Annotation confidence Not enough data

Genome context

scaffold03293: 1349-1489 [+]

Mature mes-miR172f

• Accession: MIMAT0029252
• Description: Manihot esculenta mes-miR172f mature miRNA
• Sequence: 115 - GGAAUCUUGAUGAUGCUGCAG - 135
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269