Stem-loop mes-MIR319a

Accession

MI0024295

Description

Manihot esculenta mes-MIR319a precursor miRNA

Literature search

6 open access papers mention mes-MIR319a
(25 sentences)

Sequence

cuggagcuccuuuucgaguccaauauggagggcugaucgcggcaagagcugccaucucaugcacuaaggcaagacuucacauaugagaaaggaaaaugugaaguuuggccaagugcauggugugggagcaacuccuuccgggcucucgcccaccuaUUGGACUGAAGGGAGCUCCCU
..((((((((((((..(((((((((.((.((((.((.(.(((.(((.(((.((((.(((((((((..(((.(((((((((((.............))))))))))).))).))))))))).)))).))).....)))))).).))..)))).)))))))))))))))))))))))..

Structure

cu            cg         u  a    -u  u g   c   ----a   g    c         aa   a           augag 
  ggagcuccuuuu  aguccaaua gg gggc  ga c cgg aag     gcu ccau ucaugcacu  ggc agacuucacau     a
  ||||||||||||  ||||||||| || ||||  || | ||| |||     ||| |||| |||||||||  ||| |||||||||||     a
  CCUCGAGGGAAG  UCAGGUUau cc cccg  cu g gcc uuc     cga ggug gguacguga  ccg uuugaagugua     a
UC            --         -  a    cu  c g   -   cucaa   g    u         -a   g           aaagg 

Annotation confidence Not enough data

Genome context

scaffold10493: 48255-48431 [-]

Mature mes-miR319a

• Accession: MIMAT0029253
• Description: Manihot esculenta mes-miR319a mature miRNA
• Sequence: 157 - UUGGACUGAAGGGAGCUCCCU - 177
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269