Stem-loop mes-MIR319c

Accession

MI0024297

Description

Manihot esculenta mes-MIR319c precursor miRNA

Literature search

6 open access papers mention mes-MIR319c
(20 sentences)

Sequence

gcaauauguuaacguuaaucaggacauaguaaugagaaaugguuuaagagagcuuccuucaguccacucauggacgggugaaggguuugaauuauaugccgacucauucauucaaacacaauaggaaaugguaacagugauugcuauugugaaugugugaaugaugcgggagauaaauuucauccuucucuucucugugcUUGGACUGAAGGGAGCUCCCUuuaacuguuucuu
....((((((............)))))).....(((((((((((.(((.(((((((((((((((((..((((((.(((.(((((((..((.((((.(.(((..((((((((.((..((((((((.((.((....))....)).))))))))..)).))))))))..))).).)))).))..))))))).))).))))))..))))))))))))))))).))).)))))))))))

Structure

gcaauauguuaacguuaaucaggacauaguaau           u   a                 cu      c   u       uu  a    a g   ac        u  aa        g  ---a  g 
                                 gagaaaugguu aag gagcuuccuucagucca  caugga ggg gaagggu  ga uuau u ccg  ucauucau ca  cacaauag aa    ug u
                                 ||||||||||| ||| |||||||||||||||||  |||||| ||| |||||||  || |||| | |||  |||||||| ||  |||||||| ||    ||  
                                 uucuuugucaa uUC CUCGAGGGAAGUCAGGU  gugucu uuc cuuccua  uu aaua a ggc  aguaagug gu  guguuauc uu    ac a
---------------------------------           u   C                 Uc      c   u       cu  a    g g   gu        u  aa        g  agug  a 

Annotation confidence Not enough data

Genome context

scaffold06557: 7971-8204 [+]

Mature mes-miR319c

• Accession: MIMAT0029255
• Description: Manihot esculenta mes-miR319c mature miRNA
• Sequence: 201 - UUGGACUGAAGGGAGCUCCCU - 221
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269