Stem-loop mes-MIR396a

Accession

MI0024315

Description

Manihot esculenta mes-MIR396a precursor miRNA

Literature search

4 open access papers mention mes-MIR396a
(15 sentences)

Sequence

uggcccucuucguauucUUCCACAGCUUUCUUGAACUGcaucucuacaacgaagcuugugguuauugcaugccacggcucgccaauuaagcggcuucuuguuuucuuguuuuguugcgguucaauaaagcugugggaagauacugacaggguca
(((((((.((.(((((.((((((((((((.((((((((((.(...((((.(((((..(((((........)))))(((.(((.......))))))....))))).))))...).)))))))))).)))))))))))).))))).)).)))))))

Structure

       c  c     c            C          u ucu    c     uugugguuauugcaugccac   u   ca 
uggcccu uu guauu UUCCACAGCUUU UUGAACUGca c   acaa gaagc                    ggc cgc  a
||||||| || ||||| |||||||||||| |||||||||| |   |||| |||||                    ||| |||  u
acuggga ag cauag agggugucgaaa aacuuggcgu g   uguu uuuug                    ucg gcg  u
       c  u     a            u          u uuu    c     ----------------uucu   -   aa 

Annotation confidence Not enough data

Genome context

scaffold05760: 81136-81289 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR396a

Mature mes-miR396a

• Accession: MIMAT0029273
• Description: Manihot esculenta mes-miR396a mature miRNA
• Sequence: 18 - UUCCACAGCUUUCUUGAACUG - 38
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269