Stem-loop mes-MIR399b

Accession

MI0024322

Description

Manihot esculenta mes-MIR399b precursor miRNA

Literature search

6 open access papers mention mes-MIR399b
(8 sentences)

Sequence

caggguaaacucuccauuggcaggcagccacuuacagaacuaauuugcauuauuuguuuuagugugcucucUGCCAAAGGAGAUUUGCCCGG
..(((((((.(((((.((((((((.(((((((.(((((..((((....)))))))))...)))).))).)))))))).))))))))))))..

Structure

ca       c     a        c   -    --u     ac    u 
  ggguaaa ucucc uuggcagg agc cacu   acaga  uaau u
  ||||||| ||||| |||||||| ||| ||||   |||||  ||||  
  CCCGUUU AGAGG AACCGUcu ucg guga   uguuu  auua g
GG       -     A        c   u    uuu     --    c 

Annotation confidence Not enough data

Genome context

scaffold10535: 2315-2406 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mes-MIR399b

Mature mes-miR399b

• Accession: MIMAT0029280
• Description: Manihot esculenta mes-miR399b mature miRNA
• Sequence: 72 - UGCCAAAGGAGAUUUGCCCGG - 92
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269