Stem-loop mes-MIR399d

Accession

MI0024324

Description

Manihot esculenta mes-MIR399d precursor miRNA

Literature search

6 open access papers mention mes-MIR399d
(10 sentences)

Sequence

caggguaaacucuccauuggcaggcagccacuuacagaaucaauaugcauuauuuauuuuaaucugcucucUGCCAAAGGAGAUUUGCCCGG
..(((((((.(((((.((((((((.(((.......(((((.((((.....)))).))))).....))).)))))))).))))))))))))..

Structure

ca       c     a        c   cacuuac     c    u 
  ggguaaa ucucc uuggcagg agc       agaau aaua g
  ||||||| ||||| |||||||| |||       ||||| |||| c
  CCCGUUU AGAGG AACCGUcu ucg       uuuua uuau a
GG       -     A        c   --ucuaa     u    u 

Annotation confidence Not enough data

Genome context

scaffold10535: 13795-13886 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mes-MIR399d

Mature mes-miR399d

• Accession: MIMAT0029282
• Description: Manihot esculenta mes-miR399d mature miRNA
• Sequence: 72 - UGCCAAAGGAGAUUUGCCCGG - 92
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269