Stem-loop sly-MIR168b

Accession

MI0024353

Description

Solanum lycopersicum sly-MIR168b precursor miRNA

Literature search

19 open access papers mention sly-MIR168b
(65 sentences)

Sequence

uugcggugguuucucauUCGCUUGGUGCAGGUCGGGACcuaccucgccggcaacaauggcgguagcugacggcgacggcagcguaccgguaaaaaagaaucuuauuuuuacauguuguugcguaguuuggguCCCGCCUUGCAUCAACUGAAUaggagacugcgguga
((((.(((((((((.(((((.((((((((((.(((((((((.(((((.(((((((....(((((((((.((....)).)))).)))))(((((((.........))))))).)))))))))).))..))))))))).)))))))))).))))).))))))))).))))

Structure

    g         c     C          U         -c  -   c       --------------------augg     -    a  g 
uugc gugguuucu auUCG UUGGUGCAGG CGGGACcua  cu cgc ggcaaca                        cggua gcug cg c
|||| ||||||||| ||||| |||||||||| |||||||||  || ||| |||||||                        ||||| |||| ||  
agug cgucagagg UAAGU AACUACGUUC GCCCugggu  ga gcg uuguugu                        gccau cgac gc g
    g         a     C          C         uu  u   -       acauuuuuauucuaagaaaaaaug     g    g  a 

Annotation confidence Not enough data

Genome context

chr12: 65227958-65228125 [+]

Mature sly-miR168b-5p

• Accession: MIMAT0031131
• Description: Solanum lycopersicum sly-miR168b-5p mature miRNA
• Sequence: 18 - UCGCUUGGUGCAGGUCGGGAC - 38
• Evidence: experimental ; Illumina [1]

Mature sly-miR168b-3p

• Accession: MIMAT0031132
• Description: Solanum lycopersicum sly-miR168b-3p mature miRNA
• Sequence: 133 - CCCGCCUUGCAUCAACUGAAU - 153
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23080016
   The developmental outcomes of P0-mediated ARGONAUTE destabilization in tomato
   "Hendelman A, Kravchik M, Stav R, Zik M, Lugassi N, Arazi T"
   "Planta (2013) 237:363-377