Accession
MI0024374
Description
Lotus japonicus
lja-MIR167a precursor miRNA
Sequence
366055
reads,
17222.0
reads per million, 9 experiments
acaaagaguugaguucacaagggaaaaagUGAAGCUGCCAGCAUGAUCUagcuuugguuagagaaagagguagagugcuaaugaauuaacugcuaacccugacuaGGUCAUGCUGCGACAGCCUCACUccuuccuauuuggggacccaguugu
........(((.((((.((((((((..(((((.((((((((((((((((((....((((((((.......(((....))).........)).))))))....))))))))))))).).)))).)))))..)))))..))).)))).)))....
........(((.((((.((((((((..(((((.((((((((((((((((((....((((((((.......(((....))).........)).))))))....))))))))))))).).)))).)))))..)))))..))).)))).)))....
Structure
acaaagag a a -- aa A - - cuuu - --aaagagg a
uug guuc caa gggaa agUGA GCUG C CAGCAUGAUCUag gguuag ag uag g
||| |||| ||| ||||| ||||| |||| | ||||||||||||| |||||| || |||
gac cagg guu uccuu UCACU CGAC G GUCGUACUGGauc ccaauc uc auc u
----uguu c g ua cc C A C aguc g aauuaagua g
Annotation confidence
High
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Genome context
Chr1: 55857748-55857900 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR167a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature lja-miR167a-5p
| Accession | MIMAT0029311 |
| Description | Lotus japonicus lja-miR167a-5p mature miRNA |
| Sequence | 30 - UGAAGCUGCCAGCAUGAUCU - 49 |
| Evidence |
experimental
cloned [1], Northern [1] |
Mature lja-miR167a-3p
| Accession | MIMAT0054569 |
| Description | Lotus japonicus lja-miR167a-3p mature miRNA |
| Sequence | 106 - GGUCAUGCUGCGACAGCCUCACU - 128 |
| Evidence |
experimental
unknown |
References
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