Stem-loop lja-MIR167c

Accession

MI0024376

Description

Lotus japonicus lja-MIR167c precursor miRNA

Sequence

ggucacaauggaaauagUGAAGCUGCCAGCAUGAUCUagcuuugguuagugagaggagcaacagaucaaugcuaacccucacuaggucaugcugugcuagccucacuccuuccuauuuggagacc
((((.(((.((((..(((((.((((((((((((((((((....((((((((....((........))..))))))))....))))))))))))).)).))).)))))..))))...)))..))))

Structure

    -a   --u    au     A   -  -             cuuu        agag  gca 
gguc  caa   ggaa  agUGA GCU GC CAGCAUGAUCUag    gguuagug    ga   a
||||  |||   ||||  ||||| ||| || |||||||||||||    ||||||||    ||    
ccag  guu   ccuu  ucacu cga cg gucguacuggauc    ccaaucgu    cu   c
    ag   uau    cc     c   u  u             acuc        --aa  aga 

Annotation confidence Not enough data

Genome context

Chr5: 18177341-18177465 [+]

Mature lja-miR167c

• Accession: MIMAT0029313
• Description: Lotus japonicus lja-miR167c mature miRNA
• Sequence: 18 - UGAAGCUGCCAGCAUGAUCU - 37
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154