Stem-loop lja-MIR171a

Accession

MI0024377

Description

Lotus japonicus lja-MIR171a precursor miRNA

Literature search

2 open access papers mention lja-MIR171a
(8 sentences)

Sequence

46168 reads, 10691.0 reads per million, 8 experiments

augaaguagcuauugcgaUAUUGGCUUGGUUCACUCAGAcaaaacacauacacacagaaaauguggauuauauauauguuuugguuuUGAUUGAGCCGUGCCAAUAUCucacugcuacuucau
((((((((((...((.(((((((((.(((((((.((((((((((((.(((..((((.....)))).......))).)))))))..))))).))))))).))))))))).))..))))))))))

Structure

          uau  c         U       C     --       c   -----ca    g 
augaaguagc   ug gaUAUUGGC UGGUUCA UCAGA  caaaaca aua       caca a
||||||||||   || ||||||||| ||||||| |||||  ||||||| |||       |||| a
uacuucaucg   ac CUAUAACCG GCCGAGU AGUuu  guuuugu uau       gugu a
          -uc  u         U       U     ug       a   auauuag    a 

Annotation confidence High

Genome context

Chr2: 26398110-26398232 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR171a

Mature lja-miR171a-5p

• Accession: MIMAT0054572
• Description: Lotus japonicus lja-miR171a-5p mature miRNA
• Sequence: 19 - UAUUGGCUUGGUUCACUCAGA - 39
• Evidence: experimental ; unknown

Mature lja-miR171a-3p

• Accession: MIMAT0029314
• Description: Lotus japonicus lja-miR171a-3p mature miRNA
• Sequence: 88 - UGAUUGAGCCGUGCCAAUAUC - 108
• Evidence: not_experimental

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154