Stem-loop lja-MIR171b

Accession

MI0024378

Description

Lotus japonicus lja-MIR171b precursor miRNA

Literature search

2 open access papers mention lja-MIR171b
(8 sentences)

Sequence

94205 reads, 9274.0 reads per million, 9 experiments

gcacaaauuaacaaggUAUUGACGCGUCUCAAUUUGAagacauggcuggcuaacaugaaaaccaaucauguaguuugaUUGAGCCGCGUCAAUAUCUugcuuuugcgu
((.((((....(((((((((((((((.(((((((.((..((((((.(((............))).))))))..)).))))))).)))))))))))))))..)))).))

Structure

  a    uuaa               U       U  ag      c   cuaac 
gc caaa    caaggUAUUGACGCG CUCAAUU GA  acaugg ugg     a
|| ||||    ||||||||||||||| ||||||| ||  |||||| |||      
ug guuu    guUCUAUAACUGCGC GAGUUag uu  uguacu acc     u
  c    --uc               C       u  ga      a   aaaag 

Annotation confidence Medium

Genome context

Chr6: 26439979-26440086 [-]

Mature lja-miR171b-5p

• Accession: MIMAT0054573
• Description: Lotus japonicus lja-miR171b-5p mature miRNA
• Sequence: 17 - UAUUGACGCGUCUCAAUUUGA - 37
• Evidence: experimental ; unknown

Mature lja-miR171b-3p

• Accession: MIMAT0029315
• Description: Lotus japonicus lja-miR171b-3p mature miRNA
• Sequence: 79 - UUGAGCCGCGUCAAUAUCU - 97
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154