Stem-loop lja-MIR171c

Accession

MI0024379

Description

Lotus japonicus lja-MIR171c precursor miRNA

Literature search

2 open access papers mention lja-MIR171c
(10 sentences)

Sequence

gcaaaagcagacauggcgugauguugaucuggcucauauuuaaguauaaguguaucuuaucaacuucagaUGAGCCGAAUCAAUAUCACUCuugucuucuuuuuugc
(((((((.(((((.((.(((((((((((.((((((((....(((((((((.....)))))..))))...)))))))).))))))))))))).)))))...)))))))

Structure

       --c     u  c           c        auuu    --     u 
gcaaaag   agaca gg gugauguugau uggcucau    aagu  auaag g
|||||||   ||||| || ||||||||||| ||||||||    ||||  ||||| u
cguuuuu   ucugu CU CACUAUAACUA GCCGAGUa    uuca  uauuc a
       ucu     u  -           A        -gac    ac     u 

Annotation confidence Low

Genome context

Unknown

Mature lja-miR171c

• Accession: MIMAT0029316
• Description: Lotus japonicus lja-miR171c mature miRNA
• Sequence: 71 - UGAGCCGAAUCAAUAUCACUC - 91
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154