Stem-loop lja-MIR171c

Accession

MI0024379

Description

Lotus japonicus lja-MIR171c precursor miRNA

Literature search

2 open access papers mention lja-MIR171c
(10 sentences)

Sequence

2657 reads, 262.0 reads per million, 9 experiments

gcaaaagcagacauggCGUGAUGUUGAUCUGGCUCAUAuuuaaguauaaguguaucuuaucaacuucagaUGAGCCGAAUCAAUAUCACUCuugucuucuuuuuugc
(((((((.(((((.((.(((((((((((.((((((((....(((((((((.....)))))..))))...)))))))).))))))))))))).)))))...)))))))

Structure

       --c     u  C           C        Auuu    --     u 
gcaaaag   agaca gg GUGAUGUUGAU UGGCUCAU    aagu  auaag g
|||||||   ||||| || ||||||||||| ||||||||    ||||  ||||| u
cguuuuu   ucugu CU CACUAUAACUA GCCGAGUa    uuca  uauuc a
       ucu     u  -           A        -gac    ac     u 

Annotation confidence High

Genome context

Unknown

Mature lja-miR171c-5p

• Accession: MIMAT0054574
• Description: Lotus japonicus lja-miR171c-5p mature miRNA
• Sequence: 17 - CGUGAUGUUGAUCUGGCUCAUA - 38
• Evidence: experimental ; unknown

Mature lja-miR171c-3p

• Accession: MIMAT0029316
• Description: Lotus japonicus lja-miR171c-3p mature miRNA
• Sequence: 71 - UGAGCCGAAUCAAUAUCACUC - 91
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154