Stem-loop lja-MIR172a

Accession

MI0024381

Description

Lotus japonicus lja-MIR172a precursor miRNA

Literature search

1 open access papers mention lja-MIR172a
(2 sentences)

Sequence

1717 reads, 312.0 reads per million, 8 experiments

gcugguGGAGCAUCAUCAAGAUUCACAagcuuuaagggguggauuguguuugggguggucccuaauugcuccauaucaauuugcucuuugauuugAGAAUCUUGAUGAUGCUGCAGuagc
((((.((.((((((((((((((((.((((..(((((((((((((((....(((((((((.....)))))))))...))))))))))))))))))).)))))))))))))))).)).))))

Structure

    g  G                A    cu               uguu         c 
gcug uG AGCAUCAUCAAGAUUC CAag  uuaagggguggauug    ugggguggu c
|||| || |||||||||||||||| ||||  |||||||||||||||    ||||||||| c
cgau AC UCGUAGUAGUUCUAAG guuu  aguuucucguuuaac    accucguua u
    G  G                A    --               -uau         a 

Annotation confidence Not enough data

Genome context

Unknown

Mature lja-miR172a-5p

• Accession: MIMAT0060824
• Description: Lotus japonicus lja-miR172a-5p mature miRNA
• Sequence: 7 - GGAGCAUCAUCAAGAUUCACA - 27
• Evidence: experimental ; Illumina [1]

Mature lja-miR172a-3p

• Accession: MIMAT0029319
• Description: Lotus japonicus lja-miR172a-3p mature miRNA
• Sequence: 96 - AGAAUCUUGAUGAUGCUGCAG - 116
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154