Stem-loop lja-MIR172b

Accession

MI0024382

Description

Lotus japonicus lja-MIR172b precursor miRNA

Literature search

1 open access papers mention lja-MIR172b
(2 sentences)

Sequence

8381 reads, 1992.0 reads per million, 9 experiments

ggucguuauuugcagaUGUAGCAUCAUCAAGAUUCACaugcaaaugcaaaugcaaucuaaggccaagccauagaucuuuugaagugAGAAUCUUGAUGAUGCUGCAUCAgccaugaacggcu
(((((((..(.((.(((((((((((((((((((((.(((.(((((((....)))(((((.(((...))).)))))..))))..))).))))))))))))))))))))).)).)..)))))))

Structure

       au u  a                     A   -g    ugcaaaugca     a   c 
ggucguu  u gc gaUGUAGCAUCAUCAAGAUUC Cau  caaa          aucua ggc  
|||||||  | || ||||||||||||||||||||| |||  ||||          ||||| ||| a
ucggcaa  a cg CUACGUCGUAGUAGUUCUAAG gug  guuu          uagau ccg  
       gu c  A                     A   aa    --------uc     a   a 

Annotation confidence Medium

Genome context

Chr3: 41190704-41190825 [+]

Mature lja-miR172b-5p

• Accession: MIMAT0054575
• Description: Lotus japonicus lja-miR172b-5p mature miRNA
• Sequence: 17 - UGUAGCAUCAUCAAGAUUCAC - 37
• Evidence: experimental ; unknown

Mature lja-miR172b-3p

• Accession: MIMAT0029320
• Description: Lotus japonicus lja-miR172b-3p mature miRNA
• Sequence: 87 - AGAAUCUUGAUGAUGCUGCAUCA - 109
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154