Stem-loop lja-MIR172c

Accession

MI0024383

Description

Lotus japonicus lja-MIR172c precursor miRNA

Literature search

1 open access papers mention lja-MIR172c
(2 sentences)

Sequence

8996 reads, 2292.0 reads per million, 8 experiments

agucguugucugcagguGCAGCACCAUCAAGAUUCACAcacaaauuauaaguguuuugguguugAGAAUCUUGAUGAUGCUGCAUCAgcaauaaacgauu
.((((((...(((.(((((((((.(((((((((((((((.((((..........))))))))...))))))))))).))))))))).)))...)))))).

Structure

a      guc   a         C           ---    a    uuau 
 gucguu   ugc gguGCAGCA CAUCAAGAUUC   ACAc caaa    a
 ||||||   ||| ||||||||| |||||||||||   |||| ||||     
 uagcaa   acg CUACGUCGU GUAGUUCUAAG   ugug guuu    a
u      aua   A         A           Agu    -    ugug 

Annotation confidence High

Genome context

Chr5: 28691229-28691328 [+]

Mature lja-miR172c-5p

• Accession: MIMAT0054576
• Description: Lotus japonicus lja-miR172c-5p mature miRNA
• Sequence: 18 - GCAGCACCAUCAAGAUUCACA - 38
• Evidence: experimental ; unknown

Mature lja-miR172c-3p

• Accession: MIMAT0029321
• Description: Lotus japonicus lja-miR172c-3p mature miRNA
• Sequence: 65 - AGAAUCUUGAUGAUGCUGCAUCA - 87
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154