Stem-loop lja-MIR397

Accession

MI0024386

Description

Lotus japonicus lja-MIR397 precursor miRNA

Literature search

2 open access papers mention lja-MIR397
(16 sentences)

Sequence

250868 reads, 59216.0 reads per million, 9 experiments

ucucagaugaauuguaaauucccauauuggauaaacaUUAUUGAGUGCAGCGUUGAUGAaguccugaacugcauugugcuauaagggagaagccaaaugcuuuuAUCGACGCUGCACUCAAUCAUGuuuuuuagcaauaugguucaaucgugaga
(((((((((((..........((((((((...((((((.(((((((((((((((((((((.((((.....(((...))).....))))..(((.....)))))))))))))))))))))))).)))))).....))))))))))).))).)))))

Structure

     -   -   uuguaaauuc        --gau      U                     ------------g    gaacu   u 
ucuca gau gaa          ccauauug     aaacaU AUUGAGUGCAGCGUUGAUGAa             uccu     gca  
||||| ||| |||          ||||||||     |||||| |||||||||||||||||||||             ||||     ||| u
agagu cua cuu          gguauaac     uuuGUA UAACUCACGUCGCAGCUAuuu             aggg     cgu  
     g   a   ----------        gauuu      C                     ucguaaaccgaag    aauau   g 

Annotation confidence Medium

Genome context

Chr0: 31433003-31433157 [+]

Mature lja-miR397-5p

• Accession: MIMAT0029326
• Description: Lotus japonicus lja-miR397-5p mature miRNA
• Sequence: 38 - UUAUUGAGUGCAGCGUUGAUGA - 59
• Evidence: experimental ; cloned [1], Northern [1]

Mature lja-miR397-3p

• Accession: MIMAT0054577
• Description: Lotus japonicus lja-miR397-3p mature miRNA
• Sequence: 105 - AUCGACGCUGCACUCAAUCAUG - 126
• Evidence: experimental ; unknown

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154