Stem-loop lja-MIR408

Accession

MI0024387

Description

Lotus japonicus lja-MIR408 precursor miRNA

Literature search

2 open access papers mention lja-MIR408
(3 sentences)

Sequence

13386 reads, 2151.0 reads per million, 9 experiments

auguuauuuugcugauguugacagggaugagcuaaguugaucuugauggagagacaugacaauggCAGGGAAGAGGCAGAGCAUGGauggagcuaucaacaaaauaaauugagaaugggagaaguuugUUGUGGCUCUACUCAUGCACUGccuuuucccuggccacgucucagucuccguuucucaugagagcauguuaggauacacaguagaaaaaacau
(((((.((((((((((.(((((((((((.(((...))).)))))((((((((.....(((..(((((((((((((((((.((((((.((((((((.(((((((.....((........))....))))))))))))))).)))))).))))))))))))).)))).)))....)))))))).(((....)))..)))))).))...))))))))..)))))

Structure

     -a        ---  g      gggaugagcuaaguugaucuu        gacau   aa    -             A      a        u       auaaa  gag 
auguu  uuuugcug   au uugaca                     gauggaga     gac  uggC AGGGAAGAGGCAG GCAUGG uggagcua caacaaa     uu   a
|||||  ||||||||   || ||||||                     ||||||||     |||  |||| ||||||||||||| |||||| |||||||| |||||||     ||    
uacaa  aagaugac   ua gauugu                     uugccucu     cug  accg ucccuuuuccGUC CGUACU AUCUCGGU GUUguuu     ag   a
     aa        aca  g      --------acgagaguacucu        -gacu   -c    g             A      C        -       -gaag  ggu 

Annotation confidence Medium

Genome context

Chr6: 16493676-16493896 [+]

Mature lja-miR408-5p

• Accession: MIMAT0029327
• Description: Lotus japonicus lja-miR408-5p mature miRNA
• Sequence: 66 - CAGGGAAGAGGCAGAGCAUGG - 86
• Evidence: experimental ; cloned [1]

Mature lja-miR408-3p

• Accession: MIMAT0054578
• Description: Lotus japonicus lja-miR408-3p mature miRNA
• Sequence: 129 - UUGUGGCUCUACUCAUGCACUG - 150
• Evidence: experimental ; unknown

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154