Stem-loop lja-MIR7516

Accession

MI0024388

Description

Lotus japonicus lja-MIR7516 precursor miRNA

Sequence

gccguucaauuuuggucgcgaguaaaauugUAGCGGGUGUCUUCGCCUCUGAaccuuugccuauugugcuguuaaccauucucagccuggcuucAGAGACGUGACUCCCGCUACGcauuugcucgccaucucugcugc
((((........)))).(((((((((..(((((((((.(((..((.(((((((.....(((......((((...........))))..)))))))))).)).))).)))))))))..)))))))))............

Structure

gccguucaauuuugguc         au         U   UU  C       ccuuu   uauugu    uuaa 
                 gcgaguaaa  ugUAGCGGG GUC  CG CUCUGAa     gcc      gcug    c
                 |||||||||  ||||||||| |||  || |||||||     |||      ||||    c
                 cgcucguuu  GCAUCGCCC CAG  GC GAGAcuu     cgg      cgac    a
-----cgucgucucuac         ac         U   -U  A       -----   ----uc    ucuu 

Annotation confidence Not enough data

Genome context

Chr1: 7778986-7779123 [+]

Mature lja-miR7516-5p

• Accession: MIMAT0029328
• Description: Lotus japonicus lja-miR7516-5p mature miRNA
• Sequence: 31 - UAGCGGGUGUCUUCGCCUCUGA - 52
• Evidence: experimental ; cloned [1], Northern [1]

Mature lja-miR7516-3p

• Accession: MIMAT0029329
• Description: Lotus japonicus lja-miR7516-3p mature miRNA
• Sequence: 95 - AGAGACGUGACUCCCGCUACG - 115
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154