Stem-loop lja-MIR1507b

Accession

MI0024390

Description

Lotus japonicus lja-MIR1507b precursor miRNA

Literature search

1 open access papers mention lja-MIR1507b
(6 sentences)

Sequence

132503 reads, 13411.0 reads per million, 9 experiments

aaggcaauguuugguaGAGGUGUAUGGCUGGAAAAAAgaaaaggcuucucuggucauuuggagaugcuuuucuuUCUUCCAUCCAUACAUCAUCUaacaaacugaguuuu
(((((...(((((.(((((((((((((.(((((.(((((((((.(.(((((((....))))))).)))))))))).))))).))))))))).)))).)))))...)))))

Structure

     aau     g    -         C     A         g u       u 
aaggc   guuug uaGA GGUGUAUGG UGGAA AAAgaaaag c ucucugg c
|||||   ||||| |||| ||||||||| ||||| ||||||||| | |||||||  
uuuug   caaac aUCU CUACAUACC ACCUU Uuucuuuuc g agagguu a
     agu     a    A         U     C         - u       u 

Annotation confidence High

Genome context

Chr6: 14519223-14519332 [-]

Mature lja-miR1507b-5p

• Accession: MIMAT0054580
• Description: Lotus japonicus lja-miR1507b-5p mature miRNA
• Sequence: 17 - GAGGUGUAUGGCUGGAAAAAA - 37
• Evidence: experimental ; unknown

Mature lja-miR1507b-3p

• Accession: MIMAT0029331
• Description: Lotus japonicus lja-miR1507b-3p mature miRNA
• Sequence: 75 - UCUUCCAUCCAUACAUCAUCU - 95
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154