Stem-loop lja-MIR7517

Accession

MI0024391

Description

Lotus japonicus lja-MIR7517 precursor miRNA

Sequence

4103 reads, 429.0 reads per million, 9 experiments

uuauaggcUUAAAUAAGUUUUUGGUCCCUAACcuuuaccauauguuugguuuucaucccucgccacccaccuuuacuccggcgagggacuaaaaccaaacAUAUGGUAAAGGUUAGGGACCaaaaacuuauagcagcauuuga
......(((...(((((((((((((((((((((((((((((((((((((((((..(((((((((...............)))))))))..)))))))))))))))))))))))))))))))))))))))))...)))......

Structure

uuauag   UAA                                         ca         acccac 
      gcU   AUAAGUUUUUGGUCCCUAACcuuuaccauauguuugguuuu  ucccucgcc      c
      |||   |||||||||||||||||||||||||||||||||||||||||  |||||||||      u
      cga   uauucaaaaaCCAGGGAUUGGAAAUGGUAUAcaaaccaaaa  agggagcgg      u
aguuua   cga                                         uc         ccucau 

Annotation confidence Low

Genome context

Chr3: 40233447-40233589 [-]

Mature lja-miR7517-5p

• Accession: MIMAT0054581
• Description: Lotus japonicus lja-miR7517-5p mature miRNA
• Sequence: 9 - UUAAAUAAGUUUUUGGUCCCUAAC - 32
• Evidence: experimental ; unknown

Mature lja-miR7517-3p

• Accession: MIMAT0029332
• Description: Lotus japonicus lja-miR7517-3p mature miRNA
• Sequence: 101 - AUAUGGUAAAGGUUAGGGACC - 121
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154