Stem-loop lja-MIR7518

Accession

MI0024392

Description

Lotus japonicus lja-MIR7518 precursor miRNA

Sequence

107512 reads, 5319.0 reads per million, 9 experiments

aaguugagcacaaagauacgcguaauguuuuuuucUGUCCUUCUUGUUGUUCAAAGuuuucauuuuuucuuuauauuaagauaaagaaaugugaucacuUUGCGCACUGAGCAAGGACAGGguaaacaauuaugcuauaguaguuuaauuu
(((((((((......(((.(((((((((((..((((((((((((((.(((.((((((..((((..(((((((((......))))))))).))))..)))))).))).)))).)))))))))).)))).))))))))))....)))))))))

Structure

         acaaag   c       -    uu          -    U   U      uu    uu         au 
aaguugagc      aua gcguaau guuu  uucUGUCCUU CUUG UGU CAAAGu  ucau  uuucuuuau  u
|||||||||      ||| ||||||| ||||  |||||||||| |||| ||| ||||||  ||||  |||||||||   
uuuaauuug      uau cguauua caaa  gGGACAGGAA GAGU ACG GUUuca  agug  aaagaaaua  a
         --auga   -       a    -u          C    C   C      cu    -u         ga 

Annotation confidence High

Genome context

Chr5: 30840132-30840282 [+]

Mature lja-miR7518-5p

• Accession: MIMAT0054582
• Description: Lotus japonicus lja-miR7518-5p mature miRNA
• Sequence: 36 - UGUCCUUCUUGUUGUUCAAAG - 56
• Evidence: experimental ; unknown

Mature lja-miR7518-3p

• Accession: MIMAT0029333
• Description: Lotus japonicus lja-miR7518-3p mature miRNA
• Sequence: 100 - UUGCGCACUGAGCAAGGACAGG - 121
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154