miRBase entry: lja-MIR7520

Stem-loop lja-MIR7520


Accession
MI0024394
Description
Lotus japonicus lja-MIR7520 precursor miRNA


Sequence

12681 reads, 916.0 reads per million, 9 experiments
cccuccacaaucaugaUGUCGUCAUCCUCUUCCUCCcccaucaagaucucagugguagaGAGGGGGAAGGUGAUGACAUCaugauucuagaggg
(((((...((((((((((((((((((.(((((((((.((((..........))))..).)))))))).))))))))))))))))))...)))))

Structure
     cac                  C        - -c    caag 
cccuc   aaucaugaUGUCGUCAUC UCUUCCUC C  ccau    a
|||||   |||||||||||||||||| |||||||| |  ||||     
gggag   uuaguaCUACAGUAGUGG AGGGGGAG g  ggug    u
     auc                  A        a au    acuc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Chr4: 27609544-27609637 [+]

Database links

Mature lja-miR7520-5p

Accession MIMAT0054583
Description Lotus japonicus lja-miR7520-5p mature miRNA
Sequence 17 - UGUCGUCAUCCUCUUCCUCC - 36
Evidence experimental
unknown

Mature lja-miR7520-3p

Accession MIMAT0029335
Description Lotus japonicus lja-miR7520-3p mature miRNA
Sequence 60 - GAGGGGGAAGGUGAUGACAUC - 80
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154