miRBase entry: lja-MIR7522

Stem-loop lja-MIR7522


Accession
MI0024396
Description
Lotus japonicus lja-MIR7522 precursor miRNA


Sequence

366 reads, 42.0 reads per million, 9 experiments
uaAACUGCGGACAGGUUUUAUGACuaccgcauguuuaagugcggcagauggucaauuuuuuuuaauucucucugaauucucucugaauguUUAUAAAUUCUUUGUUCUGUCCGcacuuuaauaugcggcagcacauauuugccuuucacaguuua
(((((((.(((.((((..((((.((.(((((((((.((((((((((((...............(((((.....)))))......((((........)))).....)))).)))))))).))))))))).))..))))...))))))).)))))))

Structure
       C   C    -UU    -A  a         u        -    uggucaauuuuuuuuaauucucucugaauucucucu    guU 
uaAACUG GGA AGGU   UAUG  Cu ccgcauguu aagugcgg caga                                    gaau   U
||||||| ||| ||||   ||||  || ||||||||| |||||||| ||||                                    ||||    
auuugac cuu uccg   auac  ga ggcguauaa uucacGCC GUCU                                    CUUA   A
       a   -    uuu    ac  c         u        U    -------------------------------UGUUU    AAU 


Annotation confidence Low
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Genome context
Chr1: 7960657-7960811 [+]

Database links

Mature lja-miR7522-5p

Accession MIMAT0029337
Description Lotus japonicus lja-miR7522-5p mature miRNA
Sequence 3 - AACUGCGGACAGGUUUUAUGAC - 24
Evidence experimental
cloned [1]

Mature lja-miR7522-3p

Accession MIMAT0054584
Description Lotus japonicus lja-miR7522-3p mature miRNA
Sequence 91 - UUAUAAAUUCUUUGUUCUGUCCG - 113
Evidence experimental
unknown

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154