Stem-loop lja-MIR7524

Accession

MI0024399

Description

Lotus japonicus lja-MIR7524 precursor miRNA

Sequence

1347 reads, 208.0 reads per million, 9 experiments

gacucggucaaggcacugagucaaugagucacUGGUCGAACCAGUGAGUCAUUGGGCGGAuugcuugacucgguu
((((.(((((((.(((((..(((((((.((((((((...)))))))).))))))).)))..))))))))).))))

Structure

    c       g  --   ag       g        C 
gacu ggucaag ca  cug  ucaauga ucacUGGU  
|||| ||||||| ||  |||  ||||||| |||||||| G
uugg ucaguuc gu  GGC  GGUUACU AGUGACCA  
    c       -  uA   -G       G        A 

Annotation confidence Medium

Genome context

Chr1: 269218-269292 [+]

Mature lja-miR7524-5p

• Accession: MIMAT0054587
• Description: Lotus japonicus lja-miR7524-5p mature miRNA
• Sequence: 33 - UGGUCGAACCAGUGAGUCAUUGGG - 56
• Evidence: experimental ; unknown

Mature lja-miR7524-3p

• Accession: MIMAT0029340
• Description: Lotus japonicus lja-miR7524-3p mature miRNA
• Sequence: 40 - ACCAGUGAGUCAUUGGGCGGA - 60
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154