miRBase entry: lja-MIR7526a

Stem-loop lja-MIR7526a

Accession

MI0024401

Description

Lotus japonicus lja-MIR7526a precursor miRNA

Sequence

guagcgguaacuaccgcaauuaaaauagcuguaacguccgcuAUCAAGGUAGCUGUAACUUCCgcuauuaagauaacaguuacagcuaucuugauagcggaaguuacagcuaucuugauagcggaaguuaccgcuaucuugacugcgguaguuaccgcuau
((((((((((((((((((.((((.(((((.(((((.(((((((((((((((((((((((((((((((((((((((.(.......).))))))))))))))))))))))))))))))))))))))).))))).))))).)))).))))))))))))))))))

Structure

                  a    a     u     g                                       a ag 
guagcgguaacuaccgca uuaa auagc guaac uccgcuAUCAAGGUAGCUGUAACUUCCgcuauuaagaua c  u
|||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |  u
uaucgccauugauggcgu aguu uaucg cauug aggcgauaguucuaucgacauugaaggcgauaguucuau g  a
                  c    c     c     a                                       c ac

Annotation confidence Not enough data

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Genome context

Chr1: 5373726-5373886 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR7526a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature lja-miR7526a

Accession	MIMAT0029342
Description	Lotus japonicus lja-miR7526a mature miRNA
Sequence	43 - AUCAAGGUAGCUGUAACUUCC - 63
Evidence	experimental cloned [1]

References

PubMed ID: 23071252
Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
"De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
"Plant Physiol (2012) 160:2137-2154