miRBase entry: lja-MIR7526b

Stem-loop lja-MIR7526b


Accession
MI0024402
Description
Lotus japonicus lja-MIR7526b precursor miRNA


Sequence

1101 reads, 108.0 reads per million, 9 experiments
gcgcuaacuaccgcuaucuuaguagCGGAAGUUACCGCUACUAAaauaguuguaacgucugcuAUCAAGGUAGCUGUAACUUCCgcuauuaagauagcggaaguuacugu
(((.(((((.(((((((((((((((((((((((((.((((((...(((((.(......).)))))...)))))).))))))))))))))))))))))))).))))).)))

Structure
   c     a                         C      AAa     u ua 
gcg uaacu ccgcuaucuuaguagCGGAAGUUAC GCUACU   auagu g  a
||| ||||| ||||||||||||||||||||||||| ||||||   ||||| |   
ugu auuga ggcgauagaauuaucgCCUUCAAUG CGAUGG   UAucg c  c
   c     a                         U      AAC     u ug 


Annotation confidence Low
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Genome context
Chr1: 60866471-60866580 [-]

Database links

Mature lja-miR7526b-5p

Accession MIMAT0054589
Description Lotus japonicus lja-miR7526b-5p mature miRNA
Sequence 26 - CGGAAGUUACCGCUACUAA - 44
Evidence experimental
unknown

Mature lja-miR7526b-3p

Accession MIMAT0029343
Description Lotus japonicus lja-miR7526b-3p mature miRNA
Sequence 64 - AUCAAGGUAGCUGUAACUUCC - 84
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154