miRBase entry: lja-MIR7526h

Stem-loop lja-MIR7526h


Accession
MI0024408
Description
Lotus japonicus lja-MIR7526h precursor miRNA


Sequence

2543 reads, 218.0 reads per million, 9 experiments
cuuccgcuaucuuaauagcgguaacuaccgcuaucuuaguagcgguaacuaccgcaauuaaaauagcuguaacguccgcuAUCAAGGUAGCUGUAACUUCCgcuauuuuugucuaaugcucacguuuguuguguccgcUAUCUUGAUAGCGGAAGUUACCgcuaucuugauagcggaaguuacagcuaucaagauagcggaaguuaccgcuaucaugacugcgguaguuaccgcuaucuugauugcggaag
(((((((.(((...(((((((((((((((((..((...((((((((((((.((((.(((...(((((((((((.(((((((((((((((((.(((((((((((((((.........((..((((.....))))..)).......))))))))))))))).))))))))))))))))).)))))))))))...))).)))).))))))))))))...))..)))))))))))))))))...))).)))))))

Structure
       u   uua                 ua  uua            a    a   aaa           g                 U               uuugucuaa  cu    u 
cuuccgc auc   auagcgguaacuaccgc  uc   guagcgguaacu ccgc auu   auagcuguaac uccgcuAUCAAGGUAGC GUAACUUCCgcuauu         ug  cacg u
||||||| |||   |||||||||||||||||  ||   |||||||||||| |||| |||   ||||||||||| ||||||||||||||||| |||||||||||||||         ||  |||| u
gaaggcg uag   uaucgccauugauggcg  ag   uaucgccauuga ggcg uag   uaucgacauug aggcgauaguucuaucg CAUUGAAGGCGAUAG         gc  gugu g
       u   uuc                 uc  uac            a    a   aac           a                 C               --UUCUAUc  cu    u 


Annotation confidence Low
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Genome context
Chr6: 15318288-15318538 [-]

Database links

Mature lja-miR7526h-5p

Accession MIMAT0029349
Description Lotus japonicus lja-miR7526h-5p mature miRNA
Sequence 81 - AUCAAGGUAGCUGUAACUUCC - 101
Evidence experimental
cloned [1]

Mature lja-miR7526h-3p

Accession MIMAT0054595
Description Lotus japonicus lja-miR7526h-3p mature miRNA
Sequence 139 - UAUCUUGAUAGCGGAAGUUACC - 160
Evidence experimental
unknown

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154