Stem-loop lja-MIR7528

Accession

MI0024410

Description

Lotus japonicus lja-MIR7528 precursor miRNA

Sequence

268 reads, 61.0 reads per million, 8 experiments

gagaaaggaagugaauugaguugaauugaauuuugaaguggaguugcugaugaugagagcauuauuggcaugagcugcgacaacauUUUUGCGCACCGUGUUGUUuuucagacagacauggguuguuguugcuaugaagAAUGUGCCGAAAUGCUAAUCUGAagcuuucugucuucacauuagauuguuguucuuugugugauauuugcuuacuu
(((.(((.(((((.........((((.....(((((.((((((..(((...(((...((((((.((((((((..(((((((((((.......((.(((((((((((...))))).))))))))))))))))).....))..)))))))))))))).)))...))).......)))))).))))).....)))).........))))).))).)))

Structure

   a   g     aauugaguu    ugaau     a      -----uu   gau   gag      a        ag  -----         uUUUUGC  A      -     u 
gag aag aagug         gaau     uuuga guggag       gcu   gau   agcauu uuggcaug  cu     gcgacaaca       GC CCGUGU UGUUu  
||| ||| |||||         ||||     ||||| ||||||       |||   |||   |||||| ||||||||  ||     |||||||||       || |||||| ||||| u
uuc uuc uuuau         cuug     agauu cacuuc       cga   CUA   UCGUAA AGCCGUGU  ga     cguuguugu       ug gguaca acaga  
   a   g     aguguguuu    uuguu     a      ugucuuu   AGU   --A      -        AA  aguau         -------  -      g     c 

Annotation confidence Not enough data

Genome context

Chr1: 61468270-61468484 [-]

Mature lja-miR7528-5p

• Accession: MIMAT0054596
• Description: Lotus japonicus lja-miR7528-5p mature miRNA
• Sequence: 87 - UUUUGCGCACCGUGUUGUU - 105
• Evidence: experimental ; unknown

Mature lja-miR7528-3p

• Accession: MIMAT0029351
• Description: Lotus japonicus lja-miR7528-3p mature miRNA
• Sequence: 140 - AAUGUGCCGAAAUGCUAAUCUGA - 162
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154