miRBase entry: lja-MIR7531

Stem-loop lja-MIR7531


Accession
MI0024413
Description
Lotus japonicus lja-MIR7531 precursor miRNA


Sequence

660 reads, 95.0 reads per million, 9 experiments
aagguuagucuaaauucaugcaucgguuucCGUGUUUUCUUUCAUUCCCCAuuucauuccucccaaucaaacauaacauuaauuuucaaacauagcauuaauguuauguuuaguuggaagaacggaaagggagaaauAAAGAAAAUACGGAAAUUGAGgaagaaauuuauacuaaccuu
(((((((((.((((((..(...((((((((((((((((((((..((((((.((((.(((.(((.(((.(((((((((((((((((........)).))))))))))))))).)))))).))).)))).))).)))..))))))))))))))))))))...)..)))))).)))))))))

Structure
         c      ca gca                    CA   -   A    a   c   c   c               -  uca 
aagguuagu uaaauu  u   ucgguuucCGUGUUUUCUUU  UUC CCC uuuc uuc ucc aau aaacauaacauuaau uu   a
||||||||| ||||||  |   ||||||||||||||||||||  ||| ||| |||| ||| ||| ||| ||||||||||||||| ||    
uuccaauca auuuaa  a   AGUUAAAGGCAUAAAAGAAA  aag ggg aagg aag agg uug uuuguauuguaauua ga   a
         u      ag agG                    ua   a   a    c   a   -   a               c  uac 


Annotation confidence Low
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Genome context
Chr2: 8841310-8841488 [-]

Database links

Mature lja-miR7531-5p

Accession MIMAT0029354
Description Lotus japonicus lja-miR7531-5p mature miRNA
Sequence 31 - CGUGUUUUCUUUCAUUCCCCA - 51
Evidence experimental
cloned [1]

Mature lja-miR7531-3p

Accession MIMAT0054598
Description Lotus japonicus lja-miR7531-3p mature miRNA
Sequence 138 - AAAGAAAAUACGGAAAUUGAG - 158
Evidence experimental
unknown

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154