Stem-loop lja-MIR7532b

Accession

MI0024415

Description

Lotus japonicus lja-MIR7532b precursor miRNA

Sequence

cgggucgcauugguucugGAAGCUGCCUCUGGUCGUGGUuggcgcgguggucggcgcgcuacuucucgaccgagcaguucggagcaucuaccgaugcguguucccg
((((.((((((((((((((..(((((.((.(((((.((.(((((((........)))))))..)).)))))))))))))))))......)))))))))....))))

Structure

    ---u         ------     AA     C  U     U  -U       gug 
cggg    cgcauuggu      ucugG  GCUGC UC GGUCG GG  uggcgcg   g
||||    |||||||||      |||||  ||||| || ||||| ||  |||||||    
gccc    gcguagcca      aggcu  ugacg ag ccagc cu  aucgcgc   u
    uugu         ucuacg     --     -  -     u  uc       ggc 

Annotation confidence Not enough data

Genome context

Chr1: 1352604-1352709 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR7532b

Mature lja-miR7532b

• Accession: MIMAT0029356
• Description: Lotus japonicus lja-miR7532b mature miRNA
• Sequence: 19 - GAAGCUGCCUCUGGUCGUGGU - 39
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154