Stem-loop lja-MIR7533a

Accession

MI0024416

Description

Lotus japonicus lja-MIR7533a precursor miRNA

Sequence

uuuggauccucuccaucgagcuucucuccauccucucuccauccaaaucugagccauugauuuggaaacuuaaaggcuuggauacauuuaagaagagagagaaaaaaugaauuguauuuaaaggcuugaauuaauuuaagaagagagagaaaacaugaacuaauccucaccuuuaaaauucaaaaucaauggcucagauuuuggauggaGAGGGGAUGGAGAGAAGCUGGauggagaggauccaaa
.((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((.(((..(((((((.(((((((((..........................)))))))))...((((((....))))))..(((.((...............))))).)))))))..))).)))))))))))))))).))))))))))))))))))))))))))))).)))))))))))))))).

Structure

u                g                             -                g   ac       -----------------------------------------------c         uuuaagaagaga 
 uuggauccucuccauc agcuucucuccauccucucuccauccaaa ucugagccauugauuu gaa  uuaaagg                                                uuggauaca            g
 |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||  |||||||                                                |||||||||             
 aaccuaggagagguaG UCGAAGAGAGGUAGGGGAGagguagguuu agacucgguaacuaaa cuu  aauuucc                                                aauuuaugu            a
a                G                             u                a   aa       acuccuaaucaaguacaaaagagagagaagaauuuaauuaaguucgga         uaaguaaaaaag 

Annotation confidence Not enough data

Genome context

Chr4: 2224800-2225045 [+]

Mature lja-miR7533a

• Accession: MIMAT0029357
• Description: Lotus japonicus lja-miR7533a mature miRNA
• Sequence: 210 - GAGGGGAUGGAGAGAAGCUGG - 230
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154