miRBase entry: lja-MIR7535

Stem-loop lja-MIR7535


Accession
MI0024419
Description
Lotus japonicus lja-MIR7535 precursor miRNA


Sequence

503 reads, 57.0 reads per million, 9 experiments
GGGAAAAUGUGGGUGUGGUgccuccauguggucugucaaauaaaaaugugacauauggcaauuauuauaccagauuuuuuauuuucc
.((((((((.((((.(((((......(((.((.(((((.((....)).))))).)).))).......))))).))))..))))))))

Structure
G        -U    G     -ccucca   g  c     a  a 
 GGAAAAUG  GGGU UGGUg       ugu gu uguca au a
 ||||||||  |||| |||||       ||| || ||||| ||  
 ccuuuuau  uuua accau       acg ua acagu ua a
-        uu    g     auuauua   g  u     g  a 


Annotation confidence Not enough data
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Genome context
Chr3: 31379966-31380052 [+]

Database links

Mature lja-miR7535-5p

Accession MIMAT0029360
Description Lotus japonicus lja-miR7535-5p mature miRNA
Sequence 1 - GGGAAAAUGUGGGUGUGGU - 19
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154