Stem-loop lja-MIR7537

Accession

MI0024422

Description

Lotus japonicus lja-MIR7537 precursor miRNA

Sequence

gcaacgguuucuaauuguguaaaauauuggaugguguuaaguucauucaugaacuUAGGAAAUACGCCUGCGGUUCCuaauuguguaaaauguuggucaaguuagacccuguagucagauaaaacauuagucacaaucagagaccauggagguguuuucuucuuuuagggacgaacuuaguacgaccccacauuuucagggaucaauuugc
((((.(((((((((.((((.........((.(.(((((((((((.(((.((((...(((((((((..(((.((((.((.((((((...((((((((((......))))(((....)))....))))))...)))))).)).)))).)))..)))))))))...)))).))).))))))))))).).)))))).))..)))))))...))))

Structure

    --c       --  u    uaaaauauu  a g           a   a    cuU         GC   C    C  a      uaa      --------------    aa 
gcaa   gguuucu  aa ugug         gg u guguuaaguuc uuc ugaa   AGGAAAUAC  CUG GGUU Cu auugug   aauguu              gguc  g
||||   |||||||  || ||||         || | ||||||||||| ||| ||||   |||||||||  ||| |||| || ||||||   ||||||              ||||   
cguu   cuaggga  uu acac         cc a caugauucaag agg auuu   ucuuuugug  ggu ccag ga uaacac   uuacaa              ccag  u
    uaa       cu  u    ---------  c g           c   g    ucu         ga   a    a  c      uga      aauagacugauguc    au 

Annotation confidence Not enough data

Genome context

Chr1: 42455050-42455260 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR7537

Mature lja-miR7537

• Accession: MIMAT0029363
• Description: Lotus japonicus lja-miR7537 mature miRNA
• Sequence: 56 - UAGGAAAUACGCCUGCGGUUCC - 77
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154