miRBase entry: lja-MIR7540b

Stem-loop lja-MIR7540b


Accession
MI0024426
Description
Lotus japonicus lja-MIR7540b precursor miRNA


Sequence

1305 reads, 299.0 reads per million, 9 experiments
ucuuucacguuauuucucuauuuucuccaacacUCUCCACCUCUUGAAAUUUAAGaaggaaaaaagugaaaugagugauAUGAUAAGUGAUGUGAUAGA
(((.(((((((((((.((((((..(((...((((.....((((((((...))))).))).....))))....))).)))).)).))))))))))).)))

Structure
   u           c  -    uu   -caa    CUCCA   -     A 
ucu ucacguuauuu uc uauu  cuc    cacU     CCU CUUGA  
||| ||||||||||| || ||||  |||    ||||     ||| ||||| A
AGA AGUGUAGUGAA AG Auag  gag    guga     gga GAAUU  
   U           U  U    -u   uaaa    aaaaa   a     U 


Annotation confidence Not enough data
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Genome context
Chr6: 2757358-2757456 [-]

Database links

Mature lja-miR7540b-5p

Accession MIMAT0054605
Description Lotus japonicus lja-miR7540b-5p mature miRNA
Sequence 34 - UCUCCACCUCUUGAAAUUUAAG - 55
Evidence experimental
unknown

Mature lja-miR7540b-3p

Accession MIMAT0029367
Description Lotus japonicus lja-miR7540b-3p mature miRNA
Sequence 80 - AUGAUAAGUGAUGUGAUAGA - 99
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154