Stem-loop lja-MIR7541

Accession

MI0024427

Description

Lotus japonicus lja-MIR7541 precursor miRNA

Sequence

cauaaaauuauauaacauguugguuugaugcauaggaaauaggcuacgagcaaugugacuagggguggaaauaggucgagccgagccaagcuuuguguggccuaggccuggccUGCAUUCUCUUUUGGUGGCCCaagccuggccuguggccuaucaauagaccaaauuuuaug
(((((((((...........(((((((.((.(((((..((((((((.(.((...((.((((((((.(((..(((((((.(((..((((.((...)).))))...))).)))))))..))).)))))))).))....)))))))))))..))))))).))))))))))))))))

Structure

         auauaacaugu       a  c     aa        c a  -aau  g        u   aa       a   -ga    a  u 
cauaaaauu           ugguuug ug auagg  auaggcua g gc    gu acuagggg gga  uaggucg gcc   gcca gc  
|||||||||           ||||||| || |||||  |||||||| | ||    || |||||||| |||  ||||||| |||   |||| || u
guauuuuaa           accagau ac uaucc  uguccggu c cg    CG UGGUUUUC CUU  GUccggu cgg   cggu ug  
         -----------       a  -     gg        - -  aaCC  G        U   AC       c   auc    g  u 

Annotation confidence Not enough data

Genome context

Chr1: 42871953-42872125 [-]

Mature lja-miR7541

• Accession: MIMAT0029368
• Description: Lotus japonicus lja-miR7541 mature miRNA
• Sequence: 114 - UGCAUUCUCUUUUGGUGGCCC - 134
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154