Stem-loop lja-MIR7542

Accession

MI0024428

Description

Lotus japonicus lja-MIR7542 precursor miRNA

Sequence

gUGCUUGCUUAUAGAUGGUGugauccaucacauauuguucaguguguucaauuuggcugucaauaugauuuccuuuuuuauuuucuuugcuuuugcugcggaguugugagauuccauauugucuaugaguguuguac
((((.(((((((((((((((((........(((((((..((((............)))).)))))))........((((((...((((((.......))))))..))))))...)))))))))))))))))..))))

Structure

    -U                 auccaucacauauuguucaguguguucaauuuggcugucaauaugauuuccuu      uuu      uu 
gUGC  UGCUUAUAGAUGGUGug                                                     uuuuau   cuuugc  u
||||  |||||||||||||||||                                                     ||||||   ||||||  u
caug  gugaguaucuguuauac                                                     agagug   gaggcg  g
    uu                 --------------------------------------------------cuu      -uu      uc 

Annotation confidence Not enough data

Genome context

Chr6: 19292878-19293014 [-]

Mature lja-miR7542

• Accession: MIMAT0029369
• Description: Lotus japonicus lja-miR7542 mature miRNA
• Sequence: 2 - UGCUUGCUUAUAGAUGGUG - 20
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154