Stem-loop lja-MIR7546

Accession

MI0024432

Description

Lotus japonicus lja-MIR7546 precursor miRNA

Sequence

cguggcacgcccuggUUGGUGACCGACAGGCGCGUGCcacacacgcgccgacaaggcgcguaacguggcagguuggcugcgugugggacccaguggcuccggaagugggacgcguggcacgcccugguugggcaccgacaggcgcgugccacg
((((((((((((((.((((((.((((((((.(((((((((((((((((((((..(.((((...)))).)..)))))).))))))(.(.((((.(..(....).).)))).).))))))))))))).))))).)))))))))).))))))))))

Structure

          -    g      A     -   C         -----------------------------      -      aa g    u 
cguggcacgc ccug UUGGUG CCGAC AGG GCGUGCcac                             acacgc gccgac  g cgcg  
|||||||||| |||| |||||| ||||| ||| |||||||||                             |||||| ||||||  | |||| a
gcaccgugcg ggac agccac gguug ucc cgcacggug                             ugugcg cgguug  c gugc  
          c    -      g     g   -         cgcagggugaaggccucggugacccaggg      u      ga g    a 

Annotation confidence Not enough data

Genome context

Chr2: 27501460-27501612 [-]

Mature lja-miR7546

• Accession: MIMAT0029373
• Description: Lotus japonicus lja-miR7546 mature miRNA
• Sequence: 16 - UUGGUGACCGACAGGCGCGUGC - 37
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154