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miRBase entry: ipu-mir-3618
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Dead hairpin entry
Stem-loop
ipu-mir-3618
Accession
MI0024682
Description
Ictalurus punctatus
ipu-mir-3618 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.
Sequence
Copy Sequence
GAUUUCCAAUAAUUGAGACAGUaauuucuaaaaagcugucuacauuaaugaaaagaac
......((.((((..(((((((............)))))))..)))).))........
Structure
--GAUUUC A UG aauuu CA UAAU AGACAGU c || |||| ||||||| gu auua ucugucg u caagaaaa a ca aaaaa