miRBase entry: cbr-mir-7594a-1

Stem-loop cbr-mir-7594a-1


Accession
MI0024735
Description
Caenorhabditis briggsae cbr-mir-7594a-1 precursor miRNA


Sequence

783 reads, 171.0 reads per million, 2 experiments
UCGGGUUUCAUCGUCGCCCUCGACacucacagcgaaguguUGAGGUAGGCAUGUAGCCCGAAA
(((((((.(((.(((..((((((((((........))))))))))..)))))).)))))))..

Structure
--       U   C   GC          cac 
  UCGGGUU CAU GUC  CCUCGACacu   a
  ||||||| ||| |||  ||||||||||    
  AGCCCGA GUA CGG  GGAGUuguga   g
AA       U   -   AU          agc 


Annotation confidence High
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Genome context
chrX: 11722778-11722840 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cbr-mir-7594a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-7594a-5p

Accession MIMAT0053592
Description Caenorhabditis briggsae cbr-miR-7594a-5p mature miRNA
Sequence 1 - UCGGGUUUCAUCGUCGCCCUCGAC - 24
Evidence experimental
Illumina [1]

Mature cbr-miR-7594a-3p

Accession MIMAT0029600
Description Caenorhabditis briggsae cbr-miR-7594a-3p mature miRNA
Sequence 41 - UGAGGUAGGCAUGUAGCCCGAAA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508