Stem-loop crm-mir-54

Accession

MI0024762

Description

Caenorhabditis remanei crm-mir-54 precursor miRNA

Literature search

1 open access papers mention crm-mir-54
(1 sentences)

Sequence

720036 reads, 6463.0 reads per million, 9 experiments

GGGAUAUGAAAUCACGUGAACAgcguucugaguacaugucugUACCCGUAAUCUUCAUAAUCCAAG
(((.((((((((.(((.(.(((((((.........))).)))).).))).)).)))))).)))...

Structure

---   A      -  C   U A    -   ucu 
   GGG UAUGAA AU ACG G ACAg cgu   g
   ||| |||||| || ||| | |||| |||   a
   CCU AUACUU UA UGC C Uguc gua   g
GAA   A      C  A   C A    u   cau 

Annotation confidence High

Genome context

Crem_Contig43: 489070-489135 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from crm-mir-54

Mature crm-miR-54-5p

• Accession: MIMAT0029623
• Description: Caenorhabditis remanei crm-miR-54-5p mature miRNA
• Sequence: 1 - GGGAUAUGAAAUCACGUGAACA - 22
• Evidence: experimental ; Illumina [1]

Mature crm-miR-54-3p

• Accession: MIMAT0056890
• Description: Caenorhabditis remanei crm-miR-54-3p mature miRNA
• Sequence: 43 - UACCCGUAAUCUUCAUAAUCCAAG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508