miRBase entry: crm-mir-54

Stem-loop crm-mir-54

Accession

MI0024762

Description

Caenorhabditis remanei crm-mir-54 precursor miRNA

Literature search

1 open access papers mention crm-mir-54
(1 sentences)

Sequence

GGGAUAUGAAAUCACGUGAACAgcguucugaguacaugucuguacccguaaucuucauaauccaag
(((.((((((((.(((.(.(((((((.........))).)))).).))).)).)))))).)))...

Structure

---   A      -  C   U A    -   ucu 
   GGG UAUGAA AU ACG G ACAg cgu   g
   ||| |||||| || ||| | |||| |||   a
   ccu auacuu ua ugc c uguc gua   g
gaa   a      c  a   c a    u   cau

Annotation confidence Not enough data

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Genome context

Crem_Contig43: 489070-489135 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from crm-mir-54

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature crm-miR-54

Accession	MIMAT0029623
Description	Caenorhabditis remanei crm-miR-54 mature miRNA
Sequence	1 - GGGAUAUGAAAUCACGUGAACA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508