Stem-loop crm-mir-51-1

Accession

MI0024775

Description

Caenorhabditis remanei crm-mir-51-1 precursor miRNA

Sequence

252621 reads, 2419.0 reads per million, 9 experiments

UACCCGUAGCUCCUAUCCAUGUUacuagcagauagagugaaCAUGGAAGUUGGUACAGGUGUA
((((.(((.(..((.(((((((((((.........)))).)))))))))..).))).))))..

Structure

--    C   G UC  A       -    agc 
  UACC GUA C  CU UCCAUGU Uacu   a
  |||| ||| |  || ||||||| ||||   g
  GUGG CAU G  GA AGGUACa guga   a
AU    A   G UU  -       a    gau 

Annotation confidence High

Genome context

Crem_Contig1341: 3371-3433 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-51-1

Mature crm-miR-51-5p

• Accession: MIMAT0029636
• Description: Caenorhabditis remanei crm-miR-51-5p mature miRNA
• Sequence: 1 - UACCCGUAGCUCCUAUCCAUGUU - 23
• Evidence: experimental ; Illumina [1]

Mature crm-miR-51-3p

• Accession: MIMAT0056899
• Description: Caenorhabditis remanei crm-miR-51-3p mature miRNA
• Sequence: 42 - CAUGGAAGUUGGUACAGGUGUA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508