miRBase entry: crm-mir-2225

Stem-loop crm-mir-2225


Accession
MI0024779
Description
Caenorhabditis remanei crm-mir-2225 precursor miRNA


Sequence

264497 reads, 2404.0 reads per million, 9 experiments
aGCCUUCUCACUUCUUGCCCACAccucucaaucaaauggaugUGGCAAGAAUUGCGCAGGCGGU
.((((.(.((.((((((((.(((((............)).))))))))))).)).).))))...

Structure
--a    U U  C        C   -  ucuca 
   GCCU C CA UUCUUGCC ACA cc     a
   |||| | || |||||||| ||| ||      
   CGGA G GU AAGAACGG Ugu gg     u
UGG    C C  U        -   a  uaaac 


Annotation confidence High
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Genome context
Crem_Contig259: 50201-50264 [+]

Database links

Mature crm-miR-2225-5p

Accession MIMAT0056901
Description Caenorhabditis remanei crm-miR-2225-5p mature miRNA
Sequence 2 - GCCUUCUCACUUCUUGCCCACA - 23
Evidence experimental
Illumina [1]

Mature crm-miR-2225-3p

Accession MIMAT0029640
Description Caenorhabditis remanei crm-miR-2225-3p mature miRNA
Sequence 43 - UGGCAAGAAUUGCGCAGGCGGU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508