Stem-loop crm-mir-1824

Accession

MI0024781

Description

Caenorhabditis remanei crm-mir-1824 precursor miRNA

Sequence

20945 reads, 162.0 reads per million, 9 experiments

ACGAAGCUCCCCACACUGCGACUcgucuauugaagaaauagUGGCAGUUCGCGAGCUUCGAGA
.((((((((.....(((((.(((..(((.....)))...))).)))))....))))))))...

Structure

--A        CCCAC     G   -cg   a 
   CGAAGCUC     ACUGC ACU   ucu u
   ||||||||     ||||| |||   ||| u
   GCUUCGAG     UGACG Uga   aga g
AGA        -CGCU     G   uaa   a 

Annotation confidence High

Genome context

Crem_Contig22: 611625-611687 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from crm-mir-1824

Mature crm-miR-1824-5p

• Accession: MIMAT0056903
• Description: Caenorhabditis remanei crm-miR-1824-5p mature miRNA
• Sequence: 1 - ACGAAGCUCCCCACACUGCGACU - 23
• Evidence: experimental ; Illumina [1]

Mature crm-miR-1824-3p

• Accession: MIMAT0029642
• Description: Caenorhabditis remanei crm-miR-1824-3p mature miRNA
• Sequence: 42 - UGGCAGUUCGCGAGCUUCGAGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508