miRBase entry: crm-mir-2229b

Stem-loop crm-mir-2229b


Accession
MI0024788
Description
Caenorhabditis remanei crm-mir-2229b precursor miRNA


Sequence

5193 reads, 45.0 reads per million, 9 experiments
ACAGUUUUCUCAGGGCUUUGAACgcucacugaaaaacguUGAAAGACUGAAGAGUACUGUGA
(((((.(((((((..((((.((((............)))).)))).))).)))).)))))..

Structure
--     U    -   GG    G    cucac 
  ACAGU UUCU CAG  CUUU AACg     u
  ||||| |||| |||  |||| ||||      
  UGUCA GAGA GUC  GAAA Uugc     g
AG     U    A   -A    G    aaaaa 


Annotation confidence High
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Genome context
Crem_Contig0: 2910105-2910166 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from crm-mir-2229b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-2229b-5p

Accession MIMAT0056907
Description Caenorhabditis remanei crm-miR-2229b-5p mature miRNA
Sequence 1 - ACAGUUUUCUCAGGGCUUUGAAC - 23
Evidence experimental
Illumina [1]

Mature crm-miR-2229b-3p

Accession MIMAT0029649
Description Caenorhabditis remanei crm-miR-2229b-3p mature miRNA
Sequence 40 - UGAAAGACUGAAGAGUACUGUGA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508