miRBase entry: cbn-mir-789b

Stem-loop cbn-mir-789b

Accession

MI0024807

Description

Caenorhabditis brenneri cbn-mir-789b precursor miRNA

Sequence

cgaguggucuuccaggcugagcaucuaaaagauuuugCCAUCCUGGUACACCACUCGUC
((((((((...(((((.((.(((............))))).)))))...))))))))..

Structure

--        cuu     c  a   ucuaa 
  cgaguggu   ccagg ug gca     a
  ||||||||   ||||| || |||      
  GCUCACCA   GGUCC AC Cgu     a
CU        CAU     U  -   uuuag

Annotation confidence Not enough data

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Genome context

Cbre_Contig30: 204628-204686 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-789b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-789b

Accession	MIMAT0029663
Description	Caenorhabditis brenneri cbn-miR-789b mature miRNA
Sequence	38 - CCAUCCUGGUACACCACUCGUC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508