miRBase entry: cbn-mir-789a

Stem-loop cbn-mir-789a

Accession

MI0024808

Description

Caenorhabditis brenneri cbn-mir-789a precursor miRNA

Sequence

gauuggucauccaggcggagcaucucagaaggcuugCCCUGCCUGGGUCACCAAUUGUC
(((((((.((((((((((.(((..((....))..))).)))))))))).)))))))...

Structure

---       c          a   uc  a 
   gauuggu auccaggcgg gca  uc g
   ||||||| |||||||||| |||  ||  
   UUAACCA UGGGUCCGUC Cgu  gg a
CUG       C          C   uc  a

Annotation confidence Not enough data

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Genome context

Cbre_Contig30: 201790-201848 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-789a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-789a

Accession	MIMAT0029664
Description	Caenorhabditis brenneri cbn-miR-789a mature miRNA
Sequence	37 - CCCUGCCUGGGUCACCAAUUGUC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508