miRBase entry: cbn-mir-241-1

Stem-loop cbn-mir-241-1

Accession

MI0024831

Description

Caenorhabditis brenneri cbn-mir-241-1 precursor miRNA

Sequence

AGAGGUAGGUGCGAGAAAUGAcgggcaucgugcaaaucguucauugucucccagcuacuucaac
.(((((((.((.(((((((((((((((...)))...))).))))).)))).)).)))))))...

Structure

--A       G  C    -     -   ---   u 
   GAGGUAG UG GAGA AAUGA cgg   gca  
   ||||||| || |||| ||||| |||   ||| c
   cuucauc ac cucu uuacu gcu   cgu  
caa       g  c    g     u   aaa   g

Annotation confidence Not enough data

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Genome context

Cbre_Contig123: 224987-225050 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-241-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-241

Accession	MIMAT0029685
Description	Caenorhabditis brenneri cbn-miR-241 mature miRNA
Sequence	1 - AGAGGUAGGUGCGAGAAAUGA - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508